ucar.nc2.internal.dataset

Class CoordSystemBuilder

java.lang.Object

ucar.nc2.internal.dataset.CoordSystemBuilder

Direct Known Subclasses:

ADASConvention, ATDRadarConvention, AWIPSConvention, CF1Convention, Cosmic1Convention, DefaultConventions, FslWindProfiler, GDVConvention, GIEFConvention, HdfEosModisConvention, HdfEosOmiConvention, IFPSConvention, M3IOConvention, MADISStation, Nimbus, NUWGConvention, Suomi, UnidataObsConvention, WRFConvention, ZebraConvention

public class CoordSystemBuilder
extends Object

Super class for implementing Convention-specific parsing of netCDF files. This class processes the "_Coordinate conventions", see https://www.unidata.ucar.edu/software/netcdf-java/current/reference/CoordinateAttributes.html A good strategy is for subclasses to add those attributes, and let this class construct the coordinate systems.

Nested Class Summary

Nested Classes

Modifier and Type	Class and Description
static class	CoordSystemBuilder.Factory
protected class	CoordSystemBuilder.VarProcess Classifications of Variables into axis, systems and transforms

Field Summary

Fields

Modifier and Type	Field and Description
protected String	conventionName
protected CoordinatesHelper.Builder	coords
protected com.google.common.collect.Multimap<ucar.nc2.internal.dataset.CoordSystemBuilder.DimensionWithGroup,CoordSystemBuilder.VarProcess>	coordVarsForDimension
protected NetcdfDataset.Builder<?>	datasetBuilder
protected boolean	debug
protected static org.slf4j.Logger	log
protected Formatter	parseInfo
protected Group.Builder	rootGroup
protected List<StructureDS.Builder<?>>	structList
protected Formatter	userAdvice
protected List<CoordSystemBuilder.VarProcess>	varList

Constructor Summary

Constructors

Modifier	Constructor and Description
protected	CoordSystemBuilder(NetcdfDataset.Builder<?> datasetBuilder)

Method Summary

Modifier and Type	Method and Description
protected void	addUserAdvice(String advice)
protected void	assignCoordinateSystemsExplicit() Assign explicit CoordinateSystem objects to variables.
protected void	assignCoordinateTransforms() Assign CoordinateTransform objects to Variables and Coordinate Systems.
protected void	augmentDataset(CancelTask cancelTask)
protected void	buildCoordinateSystems()
static int	countDomainSize(Variable.Builder<?>... axes)
protected CoordSystemBuilder.VarProcess	findCoordinateAxis(String name)
protected CoordSystemBuilder.VarProcess	findVarProcess(String name, CoordSystemBuilder.VarProcess from)
protected AxisType	getAxisType(VariableDS.Builder<?> vb) Identify what kind of AxisType the named variable is.
String	getConventionUsed()
String	getParseInfo()
String	getUserAdvice()
protected void	identifyCoordinateAxes() Everything named in the coordinateAxes or coordinates attribute are Coordinate axes.
protected void	identifyCoordinateSystems() Identify coordinate systems, using _Coordinate.Systems attribute.
protected void	identifyCoordinateTransforms() Identify coordinate transforms, using _CoordinateTransforms attribute.
protected boolean	isCoordinateAxisForVariable(CoordinateAxis.Builder<?> axis, VariableDS.Builder<?> vb) Does this axis "fit" this variable.
static boolean	isCoordinateVariable(Variable.Builder<?> vb) Calculate if this is a classic coordinate variable: has same name as its first dimension.
protected void	makeCoordinateAxes() Take previously identified Coordinate Axis and Coordinate Variables and make them into a CoordinateAxis.
protected void	makeCoordinateSystems()
protected void	makeCoordinateSystemsImplicit() Make implicit CoordinateSystem objects for variables that dont already have one, by using the variables' list of coordinate axes, and any coordinateVariables for it.
protected void	makeCoordinateTransforms() Take all previously identified Coordinate Transforms and create a CoordinateTransform object by calling CoordTransBuilder.makeCoordinateTransform().
VariableDS.Builder<?>	makeCoordinateTransformVariable(CoordinateTransform ct) Create a "dummy" Coordinate Transform Variable based on the given CoordinateTransform.
protected TransformBuilder	makeTransformBuilder(Variable.Builder<?> vb)
protected void	setConventionUsed(String convName)

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Detail

log

protected static final org.slf4j.Logger log

datasetBuilder

protected NetcdfDataset.Builder<?> datasetBuilder

rootGroup

protected Group.Builder rootGroup

coords

protected CoordinatesHelper.Builder coords

varList

protected List<CoordSystemBuilder.VarProcess> varList

structList

protected List<StructureDS.Builder<?>> structList

coordVarsForDimension

protected com.google.common.collect.Multimap<ucar.nc2.internal.dataset.CoordSystemBuilder.DimensionWithGroup,CoordSystemBuilder.VarProcess> coordVarsForDimension

conventionName

protected String conventionName

parseInfo

protected Formatter parseInfo

userAdvice

protected Formatter userAdvice

debug

protected boolean debug

Constructor Detail

CoordSystemBuilder

protected CoordSystemBuilder(NetcdfDataset.Builder<?> datasetBuilder)

Method Detail

isCoordinateVariable

public static boolean isCoordinateVariable(Variable.Builder<?> vb)

Calculate if this is a classic coordinate variable: has same name as its first dimension. If type char, must be 2D, else must be 1D.

Returns:

true if a coordinate variable.

countDomainSize

public static int countDomainSize(Variable.Builder<?>... axes)

isCoordinateAxisForVariable

protected boolean isCoordinateAxisForVariable(CoordinateAxis.Builder<?> axis,
                                              VariableDS.Builder<?> vb)

Does this axis "fit" this variable. True if all of the dimensions in the axis also appear in the variable. If char variable, last dimension is left out.

Parameters:

axis - check if this axis is ok for the given variable

vb - the given variable builder

Returns:

true if all of the dimensions in the axis also appear in the variable.

setConventionUsed

protected void setConventionUsed(String convName)

getConventionUsed

public String getConventionUsed()

addUserAdvice

protected void addUserAdvice(String advice)

getParseInfo

public String getParseInfo()

getUserAdvice

public String getUserAdvice()

augmentDataset

protected void augmentDataset(CancelTask cancelTask)
                       throws IOException

Throws:

IOException

buildCoordinateSystems

protected void buildCoordinateSystems()

identifyCoordinateAxes

protected void identifyCoordinateAxes()

Everything named in the coordinateAxes or coordinates attribute are Coordinate axes.

identifyCoordinateSystems

protected void identifyCoordinateSystems()

Identify coordinate systems, using _Coordinate.Systems attribute.

identifyCoordinateTransforms

protected void identifyCoordinateTransforms()

Identify coordinate transforms, using _CoordinateTransforms attribute.

getAxisType

@Nullable
protected AxisType getAxisType(VariableDS.Builder<?> vb)

Identify what kind of AxisType the named variable is. Only called for variables already identified as Coordinate Axes. Default null - subclasses can override.

Parameters:

vb - a variable already identified as a Coordinate Axis

Returns:

AxisType or null if unknown.

makeCoordinateAxes

protected void makeCoordinateAxes()

Take previously identified Coordinate Axis and Coordinate Variables and make them into a CoordinateAxis. Uses the getAxisType() method to figure out the type, if not already set.

makeCoordinateSystems

protected void makeCoordinateSystems()

assignCoordinateSystemsExplicit

protected void assignCoordinateSystemsExplicit()

Assign explicit CoordinateSystem objects to variables.

makeCoordinateSystemsImplicit

protected void makeCoordinateSystemsImplicit()

Make implicit CoordinateSystem objects for variables that dont already have one, by using the variables' list of coordinate axes, and any coordinateVariables for it. Must be at least 2 axes. All of a variable's _Coordinate Variables_ plus any variables listed in a *__CoordinateAxes_* or *_coordinates_* attribute will be made into an *_implicit_* Coordinate System. If there are at least two axes, and the coordinate system uses all of the variable's dimensions, it will be assigned to the data variable.

makeCoordinateTransforms

protected void makeCoordinateTransforms()

Take all previously identified Coordinate Transforms and create a CoordinateTransform object by calling CoordTransBuilder.makeCoordinateTransform().

makeTransformBuilder

protected TransformBuilder makeTransformBuilder(Variable.Builder<?> vb)

assignCoordinateTransforms

protected void assignCoordinateTransforms()

Assign CoordinateTransform objects to Variables and Coordinate Systems.

findVarProcess

protected CoordSystemBuilder.VarProcess findVarProcess(String name,
                                                       CoordSystemBuilder.VarProcess from)

findCoordinateAxis

protected CoordSystemBuilder.VarProcess findCoordinateAxis(String name)

makeCoordinateTransformVariable

public VariableDS.Builder<?> makeCoordinateTransformVariable(CoordinateTransform ct)

Create a "dummy" Coordinate Transform Variable based on the given CoordinateTransform. This creates a scalar Variable with dummy data, and adds the Parameters of the CoordinateTransform as attributes.

Parameters:

ct - based on the CoordinateTransform

Returns:

the Coordinate Transform Variable. You must add it to the dataset.