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A

addToParent(DapNode, DapVariable) - Method in class dap4.cdm.dsp.CDMDSP

allowCompression - Variable in class dap4.cdm.nc2.DapNetcdfFile

array - Variable in class dap4.cdm.dsp.CDMCursor

arrayify(DapType, Object) - Static method in class dap4.cdm.CDMTypeFcns

arrayify(DataType, Object) - Static method in class dap4.cdm.CDMTypeFcns

arraymap - Variable in class dap4.cdm.nc2.CDMCompiler

arraymap - Variable in class dap4.cdm.nc2.DapNetcdfFile

Originally, the array for a variable was stored using var.setCacheData().

arraymap - Variable in class dap4.cdm.nc2.DataToCDM

attributeParse(DataType, EnumTypedef, Object) - Static method in class dap4.cdm.CDMTypeFcns

convert a string to a specified cdmtype Note that if en is defined, then we attempt to convert the string as enum const

B

buildatomicvar(Variable, DapNode) - Method in class dap4.cdm.dsp.CDMDSP

buildattribute(Attribute) - Method in class dap4.cdm.dsp.CDMDSP

buildattributes(DapNode, AttributeContainer) - Method in class dap4.cdm.dsp.CDMDSP

buildcompoundtype(Variable, DapNode) - Method in class dap4.cdm.dsp.CDMDSP

builddim(Dimension) - Method in class dap4.cdm.dsp.CDMDSP

builddimrefs(DapVariable, List<Dimension>) - Method in class dap4.cdm.dsp.CDMDSP

Assign dimensions to a variable

buildDMR() - Method in class dap4.cdm.dsp.CDMDSP

Extract the metadata from the NetcdfDataset and build the DMR.

buildenum(EnumTypedef) - Method in class dap4.cdm.dsp.CDMDSP

buildenumvar(Variable) - Method in class dap4.cdm.dsp.CDMDSP

buildgroup(Group) - Method in class dap4.cdm.dsp.CDMDSP

buildmaps(DapVariable, Variable) - Method in class dap4.cdm.dsp.CDMDSP

buildopaquevar(Variable) - Method in class dap4.cdm.dsp.CDMDSP

buildseqtype(Variable) - Method in class dap4.cdm.dsp.CDMDSP

buildseqtypes(Variable) - Method in class dap4.cdm.dsp.CDMDSP

Walk this variable, including fields, to construct sequence types for any contained vlen dimensions

buildstringvar(Variable) - Method in class dap4.cdm.dsp.CDMDSP

buildstructvar(Variable) - Method in class dap4.cdm.dsp.CDMDSP

buildvariable(Variable, DapNode, List<Dimension>) - Method in class dap4.cdm.dsp.CDMDSP

C

cancel - Variable in class dap4.cdm.nc2.DapNetcdfFile

CDMAttribute(String, DapType) - Constructor for class dap4.cdm.dsp.CDMDMR.CDMAttribute

CDMAttributeSet(String) - Constructor for class dap4.cdm.dsp.CDMDMR.CDMAttributeSet

CDMCompiler - Class in dap4.cdm.nc2

The goal for the CDM compiler is produce a NetcdfDataset whose content comes from a DSP.

CDMCompiler(DapNetcdfFile, DSP) - Constructor for class dap4.cdm.nc2.CDMCompiler

Constructor

CDMCursor - Class in dap4.cdm.dsp

CDMCursor(CDMCursor) - Constructor for class dap4.cdm.dsp.CDMCursor

CDMCursor(DataCursor.Scheme, CDMDSP, DapNode, CDMCursor) - Constructor for class dap4.cdm.dsp.CDMCursor

CDMDataset(String) - Constructor for class dap4.cdm.dsp.CDMDMR.CDMDataset

CDMDimension(String, long) - Constructor for class dap4.cdm.dsp.CDMDMR.CDMDimension

CDMDMR - Class in dap4.cdm.dsp

CDMDMR() - Constructor for class dap4.cdm.dsp.CDMDMR

CDMDMR.CDMAttribute - Class in dap4.cdm.dsp

CDMDMR.CDMAttributeSet - Class in dap4.cdm.dsp

CDMDMR.CDMDataset - Class in dap4.cdm.dsp

CDMDMR.CDMDimension - Class in dap4.cdm.dsp

CDMDMR.CDMEnumConst - Class in dap4.cdm.dsp

CDMDMR.CDMEnumeration - Class in dap4.cdm.dsp

CDMDMR.CDMGroup - Class in dap4.cdm.dsp

CDMDMR.CDMMap - Class in dap4.cdm.dsp

CDMDMR.CDMOtherXML - Class in dap4.cdm.dsp

CDMDMR.CDMSequence - Class in dap4.cdm.dsp

CDMDMR.CDMStructure - Class in dap4.cdm.dsp

CDMDMR.CDMVariable - Class in dap4.cdm.dsp

CDMDSP - Class in dap4.cdm.dsp

Wrap CDM source (NetcdfDataset) to be a DSP This basically means wrapping various (CDM)Array object to look like DataVariable objects.

CDMDSP() - Constructor for class dap4.cdm.dsp.CDMDSP

CDMDSP(String) - Constructor for class dap4.cdm.dsp.CDMDSP

cdmElementClass(DataType) - Static method in class dap4.cdm.CDMTypeFcns

CDMEnumConst(String, long) - Constructor for class dap4.cdm.dsp.CDMDMR.CDMEnumConst

CDMEnumeration(String, DapType) - Constructor for class dap4.cdm.dsp.CDMDMR.CDMEnumeration

CDMGroup(String) - Constructor for class dap4.cdm.dsp.CDMDMR.CDMGroup

cdmIndexToIndex(Index) - Static method in class dap4.cdm.CDMUtil

CDMMap(DapVariable) - Constructor for class dap4.cdm.dsp.CDMDMR.CDMMap

CDMOtherXML(String) - Constructor for class dap4.cdm.dsp.CDMDMR.CDMOtherXML

cdmroot - Variable in class dap4.cdm.nc2.CDMCompiler

cdmroot - Variable in class dap4.cdm.nc2.DataToCDM

CDMSequence(String) - Constructor for class dap4.cdm.dsp.CDMDMR.CDMSequence

CDMStructure(String) - Constructor for class dap4.cdm.dsp.CDMDMR.CDMStructure

cdmtype2daptype(DataType) - Static method in class dap4.cdm.CDMTypeFcns

CDMTypeFcns - Class in dap4.cdm

This Class is used to isolate as many as possible of the switch statements using TypeSort enums (Or in somecase DapType.getTypeSort()) Singleton

CDMTypeFcns() - Constructor for class dap4.cdm.CDMTypeFcns

CDMUtil - Class in dap4.cdm

CDM related Constants and utilities common to client and server code

CDMUtil() - Constructor for class dap4.cdm.CDMUtil

CDMVariable(String, DapType) - Constructor for class dap4.cdm.dsp.CDMDMR.CDMVariable

close() - Method in class dap4.cdm.dsp.CDMDSP

close() - Method in class dap4.cdm.nc2.DapNetcdfFile

Close all resources (files, sockets, etc) associated with this file.

closed - Variable in class dap4.cdm.dsp.CDMDSP

closed - Variable in class dap4.cdm.nc2.DapNetcdfFile

compileData() - Method in class dap4.cdm.nc2.CDMCompiler

Convert a DataDataset to equivalent CDM data (Array objects).

compileDMR() - Method in class dap4.cdm.nc2.CDMCompiler

Convert a DMR to equivalent CDM meta-databuffer and populate a NetcdfDataset with it.

compoundmap - Variable in class dap4.cdm.dsp.CDMDSP

computeEffectiveShape(List<DapDimension>) - Static method in class dap4.cdm.CDMUtil

Compute the shape inferred from a set of slices.

containsKey(CDM_T) - Method in class dap4.cdm.NodeMap

containsKey(DAP_T) - Method in class dap4.cdm.NodeMap

containsVLEN(List<Dimension>) - Static method in class dap4.cdm.CDMUtil

Test if any dimension is variable length

convert(TypeSort, TypeSort, Object) - Static method in class dap4.cdm.CDMTypeFcns

convertVector(DapType, DapType, Object) - Static method in class dap4.cdm.CDMUtil

Convert an array of one type of values to another type

COUNTSIZE - Static variable in class dap4.cdm.nc2.DataToCDM

create() - Method in class dap4.cdm.nc2.DMRToCDM

Do the conversion and return a NodeMap representing the conversion.

createAtomicVar(DataCursor) - Method in class dap4.cdm.nc2.DataToCDM

Create an Atomic Valued variable.

createAttribute(DapAttribute) - Method in class dap4.cdm.nc2.DMRToCDM

Our goal is to convert, where possible, to a list of objects to a list of values acceptable to the ucar.nc2.Attribute class

createAttribute(String, DapAttribute) - Method in class dap4.cdm.nc2.DMRToCDM

createCDMRanges(List<Slice>) - Static method in class dap4.cdm.CDMUtil

createDimension(DapDimension, Group) - Method in class dap4.cdm.nc2.DMRToCDM

createDimensionRef(DapDimension, Group) - Method in class dap4.cdm.nc2.DMRToCDM

createEnum(DapEnumeration, Group) - Method in class dap4.cdm.nc2.DMRToCDM

createGroup(DapGroup, Group, NetcdfFile) - Method in class dap4.cdm.nc2.DMRToCDM

createNetcdfFile(String, CancelTask) - Method in class dap4.cdm.dsp.CDMDSP

createSequence(DataCursor) - Method in class dap4.cdm.nc2.DataToCDM

Create a sequence.

createSlices(List<Range>) - Static method in class dap4.cdm.CDMUtil

Convert a list of ucar.ma2.Range to a list of Slice More or less the inverst of create CDMRanges

createStructure(DataCursor) - Method in class dap4.cdm.nc2.DataToCDM

Create an array of structures.

createVar(DataCursor) - Method in class dap4.cdm.nc2.DataToCDM

createVar(DapVariable, NetcdfFile, Group, Structure) - Method in class dap4.cdm.nc2.DMRToCDM

Create a variable or field

createVector(DapType, long) - Static method in class dap4.cdm.CDMTypeFcns

createVector(DataType, long) - Static method in class dap4.cdm.CDMTypeFcns

D

dap4.cdm - package dap4.cdm

dap4.cdm.dsp - package dap4.cdm.dsp

dap4.cdm.nc2 - package dap4.cdm.nc2

DapNetcdfFile - Class in dap4.cdm.nc2

DapNetcdfFile(String) - Constructor for class dap4.cdm.nc2.DapNetcdfFile

Open a Dap4 connection

DapNetcdfFile(String, CancelTask) - Constructor for class dap4.cdm.nc2.DapNetcdfFile

Open a Dap4 connection or file via a D4DSP.

DapNetcdfFile.NullCancelTask - Class in dap4.cdm.nc2

DapNetcdfFileProvider - Class in dap4.cdm.nc2

DapNetcdfFileProvider() - Constructor for class dap4.cdm.nc2.DapNetcdfFileProvider

dapsize(Dimension) - Method in class dap4.cdm.dsp.CDMDSP

daptype2cdmtype(DapType) - Static method in class dap4.cdm.CDMTypeFcns

daptypeSize(TypeSort) - Static method in class dap4.cdm.CDMTypeFcns

Conmpute the size, in databuffer, of the daptype wrt to a serialization; 0 if undefined.

DataToCDM - Class in dap4.cdm.nc2

Create a set of CDM ucar.ma2.array objects that wrap a DSP.

DataToCDM(DapNetcdfFile, DSP, NodeMap) - Constructor for class dap4.cdm.nc2.DataToCDM

Constructor

DEBUG - Static variable in class dap4.cdm.dsp.CDMDSP

DEBUG - Static variable in class dap4.cdm.nc2.CDMCompiler

DEBUG - Static variable in class dap4.cdm.nc2.DataToCDM

dimsetToRanges(List<DapDimension>) - Static method in class dap4.cdm.CDMUtil

Convert a Section + variable to a constraint

dmr - Variable in class dap4.cdm.nc2.CDMCompiler

dmr - Variable in class dap4.cdm.nc2.DataToCDM

dmr - Variable in class dap4.cdm.nc2.DMRToCDM

dmrfactory - Variable in class dap4.cdm.dsp.CDMDSP

DMRToCDM - Class in dap4.cdm.nc2

Convert a DSP to corresponding NetcdfFile CDM metadata.

DMRToCDM(DapNetcdfFile, DSP) - Constructor for class dap4.cdm.nc2.DMRToCDM

dsp - Variable in class dap4.cdm.nc2.CDMCompiler

dsp - Variable in class dap4.cdm.nc2.DapNetcdfFile

dsp - Variable in class dap4.cdm.nc2.DataToCDM

dsp - Variable in class dap4.cdm.nc2.DMRToCDM

dsplocation - Variable in class dap4.cdm.nc2.DapNetcdfFile

dspMatch(String, DapContext) - Method in class dap4.cdm.dsp.CDMDSP

dspregistry - Static variable in class dap4.cdm.nc2.DapNetcdfFile

Define a map of known DSP classes.

DUMPCDL - Static variable in class dap4.cdm.dsp.CDMDSP

E

ENHANCEMENT - Static variable in class dap4.cdm.dsp.CDMDSP

enumTypeFor(DapType) - Static method in class dap4.cdm.CDMTypeFcns

extract(TypeSort, Object) - Static method in class dap4.cdm.CDMTypeFcns

extractDoubleValue(TypeSort, DataCursor, Index) - Static method in class dap4.cdm.CDMUtil

Extract, as a double, value from a (presumably) atomic typed array of values; dataset position is presumed correct.

extractLongValue(TypeSort, DataCursor, Index) - Static method in class dap4.cdm.CDMUtil

Extract, as a long, value from a (presumably) atomic typed array of values; dataset position is presumed correct.

F

fillgroup(DapGroup, Group) - Method in class dap4.cdm.dsp.CDMDSP

fillGroup(Group, DapGroup, NetcdfFile) - Method in class dap4.cdm.nc2.DMRToCDM

FILLVALUE - Static variable in class dap4.cdm.dsp.CDMDSP

finddimdecl(Dimension) - Method in class dap4.cdm.dsp.CDMDSP

findMatchingEnum(EnumTypedef) - Method in class dap4.cdm.dsp.CDMDSP

Unfortunately, the CDM Iosp does not actually use the declared enums.

G

get(CDM_T) - Method in class dap4.cdm.NodeMap

get(DAP_T) - Method in class dap4.cdm.NodeMap

getArray() - Method in class dap4.cdm.dsp.CDMCursor

getArrayMap() - Method in class dap4.cdm.nc2.CDMCompiler

getCDMMap() - Method in class dap4.cdm.NodeMap

getChecksumString(byte[]) - Static method in class dap4.cdm.CDMUtil

Given an arbitrary Array (including ArrayStructure), produce a new Array that represents the slice defined by the section.

getDSP() - Method in class dap4.cdm.nc2.DapNetcdfFile

getFieldCursor(CDMCursor, int) - Method in class dap4.cdm.dsp.CDMCursor

getLocation() - Method in class dap4.cdm.nc2.DapNetcdfFile

getNetcdfDataset() - Method in class dap4.cdm.dsp.CDMDSP

getNetcdfFile() - Method in class dap4.cdm.nc2.CDMCompiler

getNodeMap() - Method in class dap4.cdm.nc2.CDMCompiler

getProtocol() - Method in class dap4.cdm.nc2.DapNetcdfFileProvider

getVariableData(DapVariable) - Method in class dap4.cdm.dsp.CDMDSP

H

hasVLEN(List<Range>) - Static method in class dap4.cdm.CDMUtil

hasVLEN(Variable) - Static method in class dap4.cdm.CDMUtil

Test if any dimension is variable length

I

indexToCcMIndex(Index) - Static method in class dap4.cdm.CDMUtil

isCancel() - Method in class dap4.cdm.nc2.DapNetcdfFile.NullCancelTask

isconstrainable() - Method in class dap4.cdm.nc2.DapNetcdfFile

isDimDeclFor(Dimension, Dimension) - Method in class dap4.cdm.dsp.CDMDSP

isDone() - Method in class dap4.cdm.nc2.DapNetcdfFile.NullCancelTask

isOwnerOf(DatasetUrl) - Method in class dap4.cdm.nc2.DapNetcdfFileProvider

isPrimitiveVector(DataType, Object) - Static method in class dap4.cdm.CDMTypeFcns

isWhole(List<Range>, List<DapDimension>, int, int) - Static method in class dap4.cdm.CDMUtil

Test a List against a List to see if the range list represents the whole set of dimensions within the specified indices.

isWhole(List<Range>, List<Slice>) - Static method in class dap4.cdm.CDMUtil

Test a List against a List to see if the range list is whole wrt the slices

isWhole(List<Range>, Variable) - Static method in class dap4.cdm.CDMUtil

Test a List against the CDM variable's dimensions to see if the range list is whole wrt the dimensions

L

LBRACE - Static variable in class dap4.cdm.nc2.DataToCDM

listify(Object) - Static method in class dap4.cdm.CDMTypeFcns

location - Variable in class dap4.cdm.nc2.DapNetcdfFile

N

nc4loaded - Static variable in class dap4.cdm.dsp.CDMDSP

ncdfile - Variable in class dap4.cdm.dsp.CDMDSP

ncfile - Variable in class dap4.cdm.nc2.CDMCompiler

ncfile - Variable in class dap4.cdm.nc2.DataToCDM

ncfile - Variable in class dap4.cdm.nc2.DMRToCDM

nodemap - Variable in class dap4.cdm.dsp.CDMDSP

nodemap - Variable in class dap4.cdm.nc2.CDMCompiler

nodemap - Variable in class dap4.cdm.nc2.DataToCDM

nodemap - Variable in class dap4.cdm.nc2.DMRToCDM

NodeMap<CDM_T extends ucar.nc2.CDMNode,DAP_T extends dap4.core.dmr.DapNode> - Class in dap4.cdm

Provide a bi-directional 1-1 map between DapNode instances and CDMNode instances.

NodeMap() - Constructor for class dap4.cdm.NodeMap

nullcancel - Static variable in class dap4.cdm.nc2.DapNetcdfFile

NullCancelTask() - Constructor for class dap4.cdm.nc2.DapNetcdfFile.NullCancelTask

O

open(String) - Method in class dap4.cdm.dsp.CDMDSP

open(String, CancelTask) - Method in class dap4.cdm.nc2.DapNetcdfFileProvider

open(NetcdfDataset) - Method in class dap4.cdm.dsp.CDMDSP

Provide an extra API for use in testing

P

processmappedvariables(Group) - Method in class dap4.cdm.dsp.CDMDSP

put(CDM_T, DAP_T) - Method in class dap4.cdm.NodeMap

Given a CDM_T <-> DAP_T pair, insert into the maps

R

RBRACE - Static variable in class dap4.cdm.nc2.DataToCDM

read(Index) - Method in class dap4.cdm.dsp.CDMCursor

read(List<Slice>) - Method in class dap4.cdm.dsp.CDMCursor

readArrays(List<Variable>) - Method in class dap4.cdm.nc2.DapNetcdfFile

Do a bulk read on a list of Variables and return a corresponding list of Array that contains the results of a full read on each Variable.

readAtomic(List<Slice>) - Method in class dap4.cdm.dsp.CDMCursor

readData(Variable, Section) - Method in class dap4.cdm.nc2.DapNetcdfFile

Primary read entry point.

readField(int) - Method in class dap4.cdm.dsp.CDMCursor

readRecord(long) - Method in class dap4.cdm.dsp.CDMCursor

readSection(String) - Method in class dap4.cdm.nc2.DapNetcdfFile

readSequence(List<Slice>) - Method in class dap4.cdm.dsp.CDMCursor

readStructure(Index) - Method in class dap4.cdm.dsp.CDMCursor

readToByteChannel(Variable, Section, WritableByteChannel) - Method in class dap4.cdm.nc2.DapNetcdfFile

Read databuffer from a top level Variable and send databuffer to a WritableByteChannel.

recordNode(CDMNode, DapNode) - Method in class dap4.cdm.dsp.CDMDSP

Track generic CDMNode <-> DapNode

recordSeq(Variable, DapSequence) - Method in class dap4.cdm.dsp.CDMDSP

Track Variable <-> DapSequence

recordStruct(Variable, DapStructure) - Method in class dap4.cdm.dsp.CDMDSP

Track Variable <-> DapStructure

recordVar(Variable, DapVariable) - Method in class dap4.cdm.dsp.CDMDSP

Track Variable <-> DapVariable

remove(CDM_T, DAP_T) - Method in class dap4.cdm.NodeMap

Given a DAP_T <-> CDM_T pair, remove from the maps

S

setArray(Array) - Method in class dap4.cdm.dsp.CDMCursor

setDone(boolean) - Method in class dap4.cdm.nc2.DapNetcdfFile.NullCancelTask

setError(String) - Method in class dap4.cdm.nc2.DapNetcdfFile.NullCancelTask

setMember(StructureMembers.Member) - Method in class dap4.cdm.dsp.CDMCursor

setProgress(String, int) - Method in class dap4.cdm.nc2.DapNetcdfFile.NullCancelTask

setStructureData(StructureData) - Method in class dap4.cdm.dsp.CDMCursor

shadows(Group, Group) - Method in class dap4.cdm.dsp.CDMDSP

shapeToSlices(int[]) - Static method in class dap4.cdm.CDMUtil

sliceAtomic(List<Slice>, Array, DapVariable) - Method in class dap4.cdm.dsp.CDMCursor

structdata - Variable in class dap4.cdm.dsp.CDMCursor

suppress(String) - Method in class dap4.cdm.dsp.CDMDSP

Some attributes that are added by the NetcdfDataset need to be kept out of the DMR.

U

unwrap(Variable) - Static method in class dap4.cdm.CDMUtil

NetcdfDataset can end up wrapping a variable in multiple wrapping classes (e.g.

unwrapfile(NetcdfFile) - Static method in class dap4.cdm.CDMUtil

NetcdfDataset can wrap a NetcdfFile.

V

validatecdmtype(DataType, Class) - Method in class dap4.cdm.dsp.CDMDSP

varmap - Variable in class dap4.cdm.dsp.CDMDSP

vectorcopy(DapType, Object, Object, long, long) - Static method in class dap4.cdm.CDMTypeFcns

vlenmap - Variable in class dap4.cdm.dsp.CDMDSP

X

xuri - Variable in class dap4.cdm.nc2.DapNetcdfFile

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