dap4.cdm

Class CDMArrayStructure

java.lang.Object

ucar.ma2.Array

ucar.ma2.ArrayStructure

dap4.cdm.CDMArrayStructure

All Implemented Interfaces:

CDMArray

public class CDMArrayStructure
extends ucar.ma2.ArrayStructure
implements CDMArray

Implementation of ArrayStructure that wraps DAP4 databuffer

Needs serious optimization applied.

Nested Class Summary

Nested classes/interfaces inherited from class ucar.ma2.ArrayStructure

ucar.ma2.ArrayStructure.ArrayStructureIterator

Field Summary

Fields

Modifier and Type	Field and Description
protected DapType	basetype
protected long	bytesize
protected D4DataCompoundArray	d4data
protected int	dimactual
protected long	dimsize
protected D4DSP	dsp
protected CDMArray[]	instances Since we are using StructureData, we do not actually need to keep the D4DataStructure instances as such.
protected AtomicType	primitivetype
protected CDMDataset	root
protected ucar.ma2.StructureDataA[]	structdata We need instances of StructureData to give to the user.
protected DapVariable	template

Fields inherited from class ucar.ma2.ArrayStructure

members, nelems, sdata

Fields inherited from class ucar.ma2.Array

indexCalc, rank, unsigned

Method Summary

Methods

Modifier and Type	Method and Description
protected static ucar.ma2.StructureMembers	computemembers(DapStructure ds) Compute the StructureMembers object from a DapStructure.
long	computeTotalSize()
ucar.ma2.Array	getArray(int index, ucar.ma2.StructureMembers.Member m) Key interface method coming in from StructureDataA.
ucar.ma2.ArraySequence	getArraySequence(ucar.ma2.StructureMembers.Member m)
ucar.ma2.ArrayStructure	getArrayStructure(int index, ucar.ma2.StructureMembers.Member m)
protected CDMArrayAtomic	getAtomicArray(int index, ucar.ma2.StructureMembers.Member m)
DapType	getBaseType()
long	getByteSize()
D4DSP	getDSP()
byte[]	getJavaArrayByte(int index, ucar.ma2.StructureMembers.Member m)
char[]	getJavaArrayChar(int index, ucar.ma2.StructureMembers.Member m)
double[]	getJavaArrayDouble(int recnum, ucar.ma2.StructureMembers.Member m)
float[]	getJavaArrayFloat(int index, ucar.ma2.StructureMembers.Member m)
int[]	getJavaArrayInt(int index, ucar.ma2.StructureMembers.Member m)
long[]	getJavaArrayLong(int index, ucar.ma2.StructureMembers.Member m)
ByteBuffer[]	getJavaArrayOpaque(int index, ucar.ma2.StructureMembers.Member m)
short[]	getJavaArrayShort(int index, ucar.ma2.StructureMembers.Member m)
String[]	getJavaArrayString(int index, ucar.ma2.StructureMembers.Member m)
AtomicType	getPrimitiveType()
CDMDataset	getRoot()
byte	getScalarByte(int index, ucar.ma2.StructureMembers.Member m)
char	getScalarChar(int index, ucar.ma2.StructureMembers.Member m)
double	getScalarDouble(int index, ucar.ma2.StructureMembers.Member m)
float	getScalarFloat(int index, ucar.ma2.StructureMembers.Member m)
int	getScalarInt(int index, ucar.ma2.StructureMembers.Member m)
long	getScalarLong(int index, ucar.ma2.StructureMembers.Member m)
short	getScalarShort(int index, ucar.ma2.StructureMembers.Member m)
String	getScalarString(int recnum, ucar.ma2.StructureMembers.Member m) Get member databuffer of type String or char.
ucar.ma2.StructureData	getScalarStructure(int index, ucar.ma2.StructureMembers.Member m)
long	getSize()
DapVariable	getTemplate()
protected ucar.ma2.StructureData	makeStructureData(ucar.ma2.ArrayStructure as, int index)
protected CDMArray	memberArray(int recno, int memberindex)
protected static int	memberIndex(ucar.ma2.StructureMembers.Member m)
String	toString()

Methods inherited from class ucar.ma2.ArrayStructure

convertScalarDouble, convertScalarFloat, convertScalarInt, convertScalarLong, copy, copyBytes, copyChars, copyDoubles, copyFloats, copyFrom1DJavaArray, copyInts, copyLongs, copyObjects, copySequences, copyShorts, copyStructures, copyTo1DJavaArray, createView, extractMemberArray, findMember, getArrayObject, getArraySequence, getBoolean, getBoolean, getByte, getByte, getChar, getChar, getDouble, getDouble, getElementType, getFloat, getFloat, getInt, getInt, getLong, getLong, getMembers, getObject, getObject, getScalarObject, getShort, getShort, getSizeBytes, getStorage, getStructureData, getStructureData, getStructureDataIterator, getStructureMemberNames, getStructureMembers, getStructureSize, sectionNoReduce, setBoolean, setBoolean, setByte, setByte, setChar, setChar, setDouble, setDouble, setFloat, setFloat, setInt, setInt, setLong, setLong, setMemberArray, setObject, setObject, setShort, setShort, showInternal, showInternalMembers

Methods inherited from class ucar.ma2.Array

arraycopy, copyTo1DJavaArray, copyToNDJavaArray, factory, factory, factory, factory, factory, factory, factoryConstant, flip, get1DJavaArray, getDataAsByteBuffer, getDataType, getIndex, getIndexIterator, getIndexIteratorFast, getIndexPrivate, getRangeIterator, getRank, getShape, hasNext, isConstant, isUnsigned, makeArray, makeArray, makeArray, makeArray, next, nextBoolean, nextByte, nextChar, nextDouble, nextFloat, nextInt, nextLong, nextShort, permute, reduce, reduce, resetLocalIterator, reshape, reshapeNoCopy, section, section, section, sectionNoReduce, setUnsigned, shapeToString, slice, transpose

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

Field Detail

root

protected CDMDataset root

dsp

protected D4DSP dsp

template

protected DapVariable template

bytesize

protected long bytesize

basetype

protected DapType basetype

primitivetype

protected AtomicType primitivetype

d4data

protected D4DataCompoundArray d4data

dimsize

protected long dimsize

dimactual

protected int dimactual

instances

protected CDMArray[] instances

Since we are using StructureData, we do not actually need to keep the D4DataStructure instances as such. We need a "map" from index X member to a CDMArray object. Total number of objects is dimsize * |members|. Accessed by StructureData. We linearize the array so that asking for element (dim,fielindex) => dim*|members\ + fieldindex.

structdata

protected ucar.ma2.StructureDataA[] structdata

We need instances of StructureData to give to the user. We use StructureDataA so we can centralize everything in this class. The total number of StructureData objects is dimsize. If StructureDataA was an interface, then we could merge with the instances vector above.

Method Detail

getDSP

public D4DSP getDSP()

Specified by:

getDSP in interface CDMArray

getRoot

public CDMDataset getRoot()

Specified by:

getRoot in interface CDMArray

getTemplate

public DapVariable getTemplate()

Specified by:

getTemplate in interface CDMArray

getByteSize

public long getByteSize()

Specified by:

getByteSize in interface CDMArray

getBaseType

public DapType getBaseType()

Specified by:

getBaseType in interface CDMArray

getPrimitiveType

public AtomicType getPrimitiveType()

Specified by:

getPrimitiveType in interface CDMArray

getSize

public long getSize()

Overrides:

getSize in class ucar.ma2.Array

toString

public String toString()

Overrides:

toString in class ucar.ma2.Array

computeTotalSize

public long computeTotalSize()

getArray

public ucar.ma2.Array getArray(int index,
                      ucar.ma2.StructureMembers.Member m)

Key interface method coming in from StructureDataA.

Overrides:

getArray in class ucar.ma2.ArrayStructure

Parameters:

index - The instance # of the array of Structure instances

m - The member of interest in the Structure instance

Returns:

The ucar.ma2.Array instance corresponding to the instance.

getScalarDouble

public double getScalarDouble(int index,
                     ucar.ma2.StructureMembers.Member m)

Overrides:

getScalarDouble in class ucar.ma2.ArrayStructure

getScalarFloat

public float getScalarFloat(int index,
                   ucar.ma2.StructureMembers.Member m)

Overrides:

getScalarFloat in class ucar.ma2.ArrayStructure

getScalarByte

public byte getScalarByte(int index,
                 ucar.ma2.StructureMembers.Member m)

Overrides:

getScalarByte in class ucar.ma2.ArrayStructure

getScalarShort

public short getScalarShort(int index,
                   ucar.ma2.StructureMembers.Member m)

Overrides:

getScalarShort in class ucar.ma2.ArrayStructure

getScalarInt

public int getScalarInt(int index,
               ucar.ma2.StructureMembers.Member m)

Overrides:

getScalarInt in class ucar.ma2.ArrayStructure

getScalarLong

public long getScalarLong(int index,
                 ucar.ma2.StructureMembers.Member m)

Overrides:

getScalarLong in class ucar.ma2.ArrayStructure

getScalarChar

public char getScalarChar(int index,
                 ucar.ma2.StructureMembers.Member m)

Overrides:

getScalarChar in class ucar.ma2.ArrayStructure

getScalarString

public String getScalarString(int recnum,
                     ucar.ma2.StructureMembers.Member m)

Get member databuffer of type String or char.

Overrides:

getScalarString in class ucar.ma2.ArrayStructure

Parameters:

recnum - get databuffer from the recnum-th StructureData of the ArrayStructure. Must be less than getSize();

m - get databuffer from this StructureMembers.Member. Must be of type String or char.

Returns:

scalar String value

getJavaArrayDouble

public double[] getJavaArrayDouble(int recnum,
                          ucar.ma2.StructureMembers.Member m)

Overrides:

getJavaArrayDouble in class ucar.ma2.ArrayStructure

getJavaArrayFloat

public float[] getJavaArrayFloat(int index,
                        ucar.ma2.StructureMembers.Member m)

Overrides:

getJavaArrayFloat in class ucar.ma2.ArrayStructure

getJavaArrayByte

public byte[] getJavaArrayByte(int index,
                      ucar.ma2.StructureMembers.Member m)

Overrides:

getJavaArrayByte in class ucar.ma2.ArrayStructure

getJavaArrayShort

public short[] getJavaArrayShort(int index,
                        ucar.ma2.StructureMembers.Member m)

Overrides:

getJavaArrayShort in class ucar.ma2.ArrayStructure

getJavaArrayInt

public int[] getJavaArrayInt(int index,
                    ucar.ma2.StructureMembers.Member m)

Overrides:

getJavaArrayInt in class ucar.ma2.ArrayStructure

getJavaArrayLong

public long[] getJavaArrayLong(int index,
                      ucar.ma2.StructureMembers.Member m)

Overrides:

getJavaArrayLong in class ucar.ma2.ArrayStructure

getJavaArrayChar

public char[] getJavaArrayChar(int index,
                      ucar.ma2.StructureMembers.Member m)

Overrides:

getJavaArrayChar in class ucar.ma2.ArrayStructure

getJavaArrayString

public String[] getJavaArrayString(int index,
                          ucar.ma2.StructureMembers.Member m)

Overrides:

getJavaArrayString in class ucar.ma2.ArrayStructure

getJavaArrayOpaque

public ByteBuffer[] getJavaArrayOpaque(int index,
                              ucar.ma2.StructureMembers.Member m)

getScalarStructure

public ucar.ma2.StructureData getScalarStructure(int index,
                                        ucar.ma2.StructureMembers.Member m)

Overrides:

getScalarStructure in class ucar.ma2.ArrayStructure

getArrayStructure

public ucar.ma2.ArrayStructure getArrayStructure(int index,
                                        ucar.ma2.StructureMembers.Member m)

Overrides:

getArrayStructure in class ucar.ma2.ArrayStructure

getArraySequence

public ucar.ma2.ArraySequence getArraySequence(ucar.ma2.StructureMembers.Member m)

makeStructureData

protected ucar.ma2.StructureData makeStructureData(ucar.ma2.ArrayStructure as,
                                       int index)

Specified by:

makeStructureData in class ucar.ma2.ArrayStructure

computemembers

protected static ucar.ma2.StructureMembers computemembers(DapStructure ds)

Compute the StructureMembers object from a DapStructure. May need to recurse if a field is itself a Structure

Parameters:

ds - The DapStructure to use to construct a StructureMembers object.

Returns:

The StructureMembers object for the given DapStructure

memberArray

protected CDMArray memberArray(int recno,
                   int memberindex)

memberIndex

protected static int memberIndex(ucar.ma2.StructureMembers.Member m)

getAtomicArray

protected CDMArrayAtomic getAtomicArray(int index,
                            ucar.ma2.StructureMembers.Member m)