ucar.nc2.jni.netcdf

Class Nc4Iosp

java.lang.Object

ucar.nc2.iosp.AbstractIOServiceProvider

ucar.nc2.jni.netcdf.Nc4Iosp

All Implemented Interfaces:

java.lang.Comparable<ucar.nc2.iosp.IOServiceProvider>, ucar.nc2.iosp.IOServiceProvider, ucar.nc2.iosp.IOServiceProviderWriter

Deprecated.

do not use, will be removed in ver 6.

@Deprecated
public class Nc4Iosp
extends ucar.nc2.iosp.AbstractIOServiceProvider
implements ucar.nc2.iosp.IOServiceProviderWriter

IOSP for reading netcdf files through JNA interface to netcdf C library

See Also:

, ,

Nested Class Summary

Nested classes/interfaces inherited from interface ucar.nc2.iosp.IOServiceProvider

ucar.nc2.iosp.IOServiceProvider.SortGroup

Field Summary

Fields

Modifier and Type	Field and Description
static boolean	DEBUG Deprecated.
static int	NC_TURN_OFF_LOGGING Deprecated.
static java.lang.String	TRANSLATE_NC4 Deprecated.
static java.lang.String	TRANSLATE_NONE Deprecated.
static java.lang.String	TRANSLATECONTROL Deprecated.

Fields inherited from class ucar.nc2.iosp.AbstractIOServiceProvider

location, ncfile, raf, rafOrder

Constructor Summary

Constructors

Constructor and Description
Nc4Iosp() Deprecated.
Nc4Iosp(ucar.nc2.NetcdfFileWriter.Version version) Deprecated.

Method Summary

Modifier and Type	Method and Description
int	appendStructureData(ucar.nc2.Structure s, ucar.ma2.StructureData sdata) Deprecated.
void	close() Deprecated.
void	create(java.lang.String filename, ucar.nc2.NetcdfFile ncfile, int extra, long preallocateSize, boolean largeFile) Deprecated.
static void	dumpbytes(byte[] bytes, int start, int len, java.lang.String tag) Deprecated.
void	flush() Deprecated.
static Nc4prototypes	getCLibrary() Deprecated. use NetcdfClibrary.getNativeInterface
java.lang.String	getFileTypeDescription() Deprecated.
java.lang.String	getFileTypeId() Deprecated.
java.lang.String	getFileTypeVersion() Deprecated.
static long	getNativeAddr(int pos, java.nio.ByteBuffer buf) Deprecated.
static boolean	isClibraryPresent() Deprecated. use NetcdfClibrary.isLibraryPresent
boolean	isValidFile(ucar.unidata.io.RandomAccessFile raf) Deprecated. Checks whether raf is a valid file NetCDF-4 file.
void	open(ucar.unidata.io.RandomAccessFile raf, ucar.nc2.NetcdfFile ncfile, ucar.nc2.util.CancelTask cancelTask) Deprecated.
void	openForWriting(ucar.unidata.io.RandomAccessFile raf, ucar.nc2.NetcdfFile ncfile, ucar.nc2.util.CancelTask cancelTask) Deprecated.
ucar.ma2.Array	readData(ucar.nc2.Variable v2, ucar.ma2.Section section) Deprecated.
boolean	rewriteHeader(boolean largeFile) Deprecated.
java.lang.Object	sendIospMessage(java.lang.Object message) Deprecated.
Nc4Iosp	setAddReserved(boolean tf) Deprecated.
void	setChunker(ucar.nc2.write.Nc4Chunking chunker) Deprecated.
static void	setDebugFlags(ucar.nc2.util.DebugFlags flags) Deprecated.
void	setFill(boolean fill) Deprecated.
static void	setLibraryAndPath(java.lang.String jnaPath, java.lang.String libName) Deprecated. use NetcdfClibrary.setLibraryNameAndPath
static int	setLogLevel(int level) Deprecated. use NetcdfClibrary.setLogLevel
static java.lang.String	show(SizeT[] inta) Deprecated.
void	updateAttribute(ucar.nc2.Variable v2, ucar.nc2.Attribute att) Deprecated.
static void	useHdfEos(boolean val) Deprecated.
void	writeData(ucar.nc2.Variable v2, ucar.ma2.Section section, ucar.ma2.Array values) Deprecated.

Methods inherited from class ucar.nc2.iosp.AbstractIOServiceProvider

build, buildFinish, getDetailInfo, getLastModified, getStructureIterator, isBuilder, reacquire, readSection, readToByteChannel, readToOutputStream, release, setNetcdfFile, streamToByteChannel, syncExtend, toStringDebug

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Methods inherited from interface ucar.nc2.iosp.IOServiceProvider

build, buildFinish, compareTo, getDetailInfo, getSortGroup, getStructureIterator, isBuilder, reacquire, readSection, readToByteChannel, readToOutputStream, release, streamToByteChannel, syncExtend, toStringDebug

Field Detail

DEBUG

public static final boolean DEBUG

Deprecated.

See Also:

Constant Field Values

NC_TURN_OFF_LOGGING

public static int NC_TURN_OFF_LOGGING

Deprecated.

TRANSLATECONTROL

public static final java.lang.String TRANSLATECONTROL

Deprecated.

See Also:

Constant Field Values

TRANSLATE_NONE

public static final java.lang.String TRANSLATE_NONE

Deprecated.

See Also:

Constant Field Values

TRANSLATE_NC4

public static final java.lang.String TRANSLATE_NC4

Deprecated.

See Also:

Constant Field Values

Constructor Detail

Nc4Iosp

public Nc4Iosp()

Deprecated.

Nc4Iosp

public Nc4Iosp(ucar.nc2.NetcdfFileWriter.Version version)

Deprecated.

Method Detail

setLibraryAndPath

@Deprecated
public static void setLibraryAndPath(java.lang.String jnaPath,
                                                 java.lang.String libName)

Deprecated. use NetcdfClibrary.setLibraryNameAndPath

set the path and name of the netcdf c library. must be called before load() is called.

Parameters:

jnaPath - path to shared libraries

libName - library name

isClibraryPresent

@Deprecated
public static boolean isClibraryPresent()

Deprecated. use NetcdfClibrary.isLibraryPresent

Test if the netcdf C library is present and loaded.

Returns:

true if present

getCLibrary

@Deprecated
public static Nc4prototypes getCLibrary()

Deprecated. use NetcdfClibrary.getNativeInterface

setLogLevel

@Deprecated
public static int setLogLevel(int level)

Deprecated. use NetcdfClibrary.setLogLevel

Set the log level for loaded library. Do nothing if set_log_level is not available.

useHdfEos

public static void useHdfEos(boolean val)

Deprecated.

setDebugFlags

public static void setDebugFlags(ucar.nc2.util.DebugFlags flags)

Deprecated.

setChunker

public void setChunker(ucar.nc2.write.Nc4Chunking chunker)

Deprecated.

isValidFile

public boolean isValidFile(ucar.unidata.io.RandomAccessFile raf)
                    throws java.io.IOException

Deprecated.

Checks whether raf is a valid file NetCDF-4 file. Actually, it checks whether it is a valid HDF-5 file of any type. Furthermore, it checks whether the NetCDF C library is available on the system. If both conditions are satisfied, this method returns true; otherwise it returns false.

Specified by:

isValidFile in interface ucar.nc2.iosp.IOServiceProvider

Parameters:

raf - a file on disk.

Returns:

true if raf is a valid HDF-5 file and the NetCDF C library is available.

Throws:

java.io.IOException - if an I/O error occurs.

getFileTypeDescription

public java.lang.String getFileTypeDescription()

Deprecated.

Specified by:

getFileTypeDescription in interface ucar.nc2.iosp.IOServiceProvider

getFileTypeId

public java.lang.String getFileTypeId()

Deprecated.

Specified by:

getFileTypeId in interface ucar.nc2.iosp.IOServiceProvider

getFileTypeVersion

public java.lang.String getFileTypeVersion()

Deprecated.

Specified by:

getFileTypeVersion in interface ucar.nc2.iosp.IOServiceProvider

Overrides:

getFileTypeVersion in class ucar.nc2.iosp.AbstractIOServiceProvider

close

public void close()
           throws java.io.IOException

Deprecated.

Specified by:

close in interface ucar.nc2.iosp.IOServiceProvider

Overrides:

close in class ucar.nc2.iosp.AbstractIOServiceProvider

Throws:

java.io.IOException

open

public void open(ucar.unidata.io.RandomAccessFile raf,
                 ucar.nc2.NetcdfFile ncfile,
                 ucar.nc2.util.CancelTask cancelTask)
          throws java.io.IOException

Deprecated.

Specified by:

open in interface ucar.nc2.iosp.IOServiceProvider

Overrides:

open in class ucar.nc2.iosp.AbstractIOServiceProvider

Throws:

java.io.IOException

openForWriting

public void openForWriting(ucar.unidata.io.RandomAccessFile raf,
                           ucar.nc2.NetcdfFile ncfile,
                           ucar.nc2.util.CancelTask cancelTask)
                    throws java.io.IOException

Deprecated.

Specified by:

openForWriting in interface ucar.nc2.iosp.IOServiceProviderWriter

Throws:

java.io.IOException

dumpbytes

public static void dumpbytes(byte[] bytes,
                             int start,
                             int len,
                             java.lang.String tag)

Deprecated.

readData

public ucar.ma2.Array readData(ucar.nc2.Variable v2,
                               ucar.ma2.Section section)
                        throws java.io.IOException,
                               ucar.ma2.InvalidRangeException

Deprecated.

Specified by:

readData in interface ucar.nc2.iosp.IOServiceProvider

Throws:

java.io.IOException

ucar.ma2.InvalidRangeException

show

public static java.lang.String show(SizeT[] inta)

Deprecated.

create

public void create(java.lang.String filename,
                   ucar.nc2.NetcdfFile ncfile,
                   int extra,
                   long preallocateSize,
                   boolean largeFile)
            throws java.io.IOException

Deprecated.

Specified by:

create in interface ucar.nc2.iosp.IOServiceProviderWriter

Throws:

java.io.IOException

writeData

public void writeData(ucar.nc2.Variable v2,
                      ucar.ma2.Section section,
                      ucar.ma2.Array values)
               throws java.io.IOException,
                      ucar.ma2.InvalidRangeException

Deprecated.

Specified by:

writeData in interface ucar.nc2.iosp.IOServiceProviderWriter

Throws:

java.io.IOException

ucar.ma2.InvalidRangeException

appendStructureData

public int appendStructureData(ucar.nc2.Structure s,
                               ucar.ma2.StructureData sdata)
                        throws java.io.IOException,
                               ucar.ma2.InvalidRangeException

Deprecated.

Specified by:

appendStructureData in interface ucar.nc2.iosp.IOServiceProviderWriter

Throws:

java.io.IOException

ucar.ma2.InvalidRangeException

flush

public void flush()
           throws java.io.IOException

Deprecated.

Specified by:

flush in interface ucar.nc2.iosp.IOServiceProviderWriter

Throws:

java.io.IOException

setAddReserved

public Nc4Iosp setAddReserved(boolean tf)

Deprecated.

setFill

public void setFill(boolean fill)

Deprecated.

Specified by:

setFill in interface ucar.nc2.iosp.IOServiceProviderWriter

rewriteHeader

public boolean rewriteHeader(boolean largeFile)
                      throws java.io.IOException

Deprecated.

Specified by:

rewriteHeader in interface ucar.nc2.iosp.IOServiceProviderWriter

Throws:

java.io.IOException

updateAttribute

public void updateAttribute(ucar.nc2.Variable v2,
                            ucar.nc2.Attribute att)
                     throws java.io.IOException

Deprecated.

Specified by:

updateAttribute in interface ucar.nc2.iosp.IOServiceProviderWriter

Throws:

java.io.IOException

getNativeAddr

public static long getNativeAddr(int pos,
                                 java.nio.ByteBuffer buf)

Deprecated.

sendIospMessage

public java.lang.Object sendIospMessage(java.lang.Object message)

Deprecated.

Specified by:

sendIospMessage in interface ucar.nc2.iosp.IOServiceProvider

Overrides:

sendIospMessage in class ucar.nc2.iosp.AbstractIOServiceProvider